Conda install bcftools download.

• Conda install bcftools download About Documentation Support. In versions of samtools <= 0. fa | bcftools call -mv - However below are the commands used during the installation. Good direction to find an installer package for Samtools. Always use conda to install when possible. Learning outcomes¶. extract fields from structured annotations such as INFO/CSQ created by bcftools/csq or VEP. After installation, it’s good practice to verify the installation and check the HTSlib also provides the bgzip, htsfile, and tabix utilities, so you may also want to build and install HTSlib to get these utilities, or see the additional instructions in INSTALL to install them from a samtools or bcftools source package. Conda is an open source package management system and environment management system for installing multiple versions of software packages and their dependencies and switching easily between them. Oct 5, 2023 · uname -v #58~20. As from v1. org. bashrc), the session may fail with a black screen. What is bcftools. 20131119. 21 htslib-1. Anaconda Distribution # conda install vcf2gwas -c conda-forge -c bioconda -c fvogt257 Everything is ready for analysis now. be/BLhVqBXL_v4Installation instructio Dec 19, 2023 · bcftools安装问题这是我的第一个博客，可能不太好看，仅作为个人学习记录，若有问题，欢迎与我交流。安装需要sudo命令，如果apt-get不能下载，可使用yum -y，安装步骤可参考其他人的博客，安装过程比较简单。 To download Newick Utilities. Go to ai. Install it with: conda install mamba -n base -c conda-forge; Verify the installation: mamba --version; Step 2: Set Up Bioconda. 3. conda install To install this package run one of the following: conda install bioconda::ensembl-vep Good direction to find an installer package for Samtools. Both SAMtools and BCFtools are freely available on GitHub under the permissive MIT licence, free for both non-commercial and commercial use. Given that you already have a conda environment in which you want to have this package, install with: Feb 23, 2021 · # tested on WSL 2, Ubuntu 18. To install this package run one of the following: conda install bioconda::bcftools-snvphyl-plugin Sep 3, 2018 · We now want to add bcftools to our environment. The following are the most popular installers currently available: Miniconda # Miniconda is a minimal installer provided by Anaconda. The latest versioned release can be downloaded from www. or alternatively to download pre-compiled binaries Installing conda# To install conda, you must first pick the right installer for you. 2 If using con Jun 2, 2019 · conda install sra-tools conda install samtools conda install bcftools conda install vep conda install snpEFF conda install multiqc conda install qualimap 可以一次性安装 代码语言： javascript Download and unzip the executable (from the official conda-forge package): Ensure that basic utilities are installed. 0库。为了解决这个 Feb 1, 2024 · conda create --name fastqc_env. Install FastQC: With your environment set up, install FastQC by running: conda install -c bioconda fastqc. 04. 5k次，点赞26次，收藏28次。以下内容均是在课堂中，根据老师讲解与帮助完成部分文件和内容由老师提供和准备多种安装方式中，老师已经帮我们提前安装好，这里就不再上机演示了，只演示bam to vcf 【bcftools】的步骤。 Dec 22, 2021 · Conda will download and cache temporary files; remember to use conda clean periodically to clean up temp conda install -c bioconda bcftools cd /tmp wget https Sep 2, 2019 · # total number of SNPs bcftools view -v snps NA12878. 4444 total downloads ; Last upload: 7 years and 6 months ago Installers. org/download/ # create download directory for BCFtools mkdir bcftools_download Aug 11, 2023 · To successfully complete this workshop, you will need to install the following tools: BCFtools; conda install -c bioconda bcftools. Also install the required htslib package from Jun 1, 2020 · 7. This is the official development repository for BCFtools. 10" and got a bunch of "Package conflicts for:" zlib, libstdcxx-ng, libgcc-ng, and ncurses Mar 24, 2023 · samtools和bcftools的安装. 18 ResolvePackageNotFound: - conda=23. bcftools merge Jul 26, 2021 · bcftools进行SNP calling. Open Source Jan 4, 2019 · 2019 2/26 インストール追記 2019 12/8 追記 2020 3/25 conda追記 2020 10/13 1. gz; transanno swaps REF and ALT if reference allele was changed. 7 Download Anaconda Distribution Version | Release Date:Download For: High-Performance Distribution Easily install 1,000+ data science packages Package Management Manage packages conda install -c bioconda eagle conda install -c bioconda beagle conda install -c r r-base conda install -c bioconda bcftools conda install -c conda-forge r-data. 2 samtools==1. 文章浏览阅读1. 12 BCFtools is a set of utilities that manipulate variant calls in We would like to show you a description here but the site won’t allow us. Samtools and BCFtools both use HTSlib internally, but these source packages contain their own copies of htslib so they can be built independently. But when I call samtools --- Command 'samtools' not found, but can be installed with: Apr 3, 2024 · After I run this: $ sudo make prefix=/usr/local/bin install I got result below. Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. table conda install -c conda-forge r-sm Below is an example of one way to achieve this using VCFtool and BCFtools: Install pixy via the conda-forge channel. Sign In. 21 bcftools-1. bcftools stats; 用于生成VCF文件的统计信息，包括变异类型、变异频率、基因型质量等. 0; osx-64 v2. 21. gz | grep -v "^#" | cut -f2 | sort -u | wc -l About Anaconda Help Download Anaconda. To install this package run: conda install vcf2gwas -c conda-forge -c bioconda -c fvogt257 While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). From the Packages and Containers tab you can select a conda Oct 7, 2021 · 写在前面 第一次写这玩意，文笔啥的大家见谅！主要是对自己的学习过程记录一下，话不多说上正菜。bcftools是在处理数据时经常用到的辅助软件。 BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. To install this package run one of the following: conda install compbiocore::bcftools View the Project on GitHub samtools/bcftools Download www. 0; conda install To install this package run one of the following: conda install bioconda::bioconductor-rsamtools BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. Run conda install --help to see help information and a list of available options. 18 bcftools=1. 12 BCFtools is a set of utilities that manipulate variant calls in To install this package run one of the following: conda install bioconda::gatk4 Download Anaconda. (The "Source code" downloads are generated by GitHub and are incomplete as they don't bundle HTSlib and are missing some generated files. bcftools sort -O z -o SUCCEEDED. Optionally, to test the installation and copy the example files to your current working directory, run: When installation is finished, from the Start menu, open either the Anaconda Command Prompt (cmd. so. 9) Download the source code here: htslib-1. 1; osx-64 v2. Open Source Download Miniconda. The SAMtools and BCFtools packages represent a unique collection of tools that have been used in numerous other software projects and countless genomic pipelines. bz2. If no environment is specified in the command, conda installs the package in the working environment. 1. 生成含有包括GT（基因型）、AD（等位基因深度）和DP（读取深度）信息的vcf文件。 Feb 15, 2023 · Conda-forge has gsl=2. About conda config --add channels bioconda conda config --add channels conda-forge conda config --set channel_priority strict conda install pysam Installation through bioconda is the recommended way to install pysam as it resolves non-python dependencies and uses pre-configured compilation options. It’s the best tool when available for installations. To see if a package is available and what versions type: $ conda search bcftools One can install the latest version by: $ conda install bcftools Or set the version explicit: $ conda install bcftools=1. hg19. 9. Activate the new environment with: conda activate fastqc_env. gz && bcftools index -t SUCCEEDED. 0: conda install samtools=1. 需要的包也太多了，希望这些都行都能整一个自动安装依赖包的功能，或者像gcc那样，附带个脚本 To install this package run one of the following: conda install bioconda::samtools Download Anaconda. Jul 12, 2021 · If you install samtools and bcftools afresh today: conda create -n sambcfenv samtools bcftools then you get up to date versions of samtools and bcftools (1. 0; linux-64 v2. linux-64 v1. Type make install to install the bcftools executable and associated scripts and a manual page to /usr/local. 2 If using con e. Oct 1, 2021 · This tutorial shows you how to quickly install bcftools using anacondaSetting up Linux on Windows: https://youtu. After studying this tutorial section you should be able to: #. Aug 29, 2024 · 文章浏览阅读504次。不指定虚拟机里conda的安装路径到其他盘了 而是直接安装在win11 WSL默认目录下 并安装conda而不是miniconda。2. Verification: Verify the installation by But, now that it’s 2017, like most good software the sra-tools package has become available through conda, making it easy enough for anyone to install and use. 1; conda install To install this package run one of the following: conda install conda-forge::micromamba Installing conda packages. Download and install → BCFtools # vcfutils. 19 calling was done with bcftools view. All of these take quite a bit of space but are not needed after the install. e. Use tools to call variants based on a reference genome. They have been built recently with the current conda packages and are free from this libcrypto problem, which is a thing of the past. conda create -n bioenv conda activate bioenv conda config --env --add channels bioconda conda config --env --add channels conda-forge conda config --env --set channel_priority strict All subsequent installations must have the environment activated to use this environment-specific configuration. Nov 19, 2022 · Use conda to simplify things: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18. Aug 5, 2024 · 它由三个独立的仓库组成：Samtools，BCFtools 和 HTSlib。由于我是非root用户，没有权限通过编译进行安装，因此这里介绍如何通过conda 环境进行安装samtools。新建或进入已有的conda环境，这里我使用如下命令，进入自己的conda base环境。 Dec 20, 2021 · If you add the executables of the conda dbus package to your PATH in one of your startup files (e. There isn't anything we can do to fix other vendors packaging of our tools short of taking it on ourselves, which isn't something we have time to do. ~/. You switched accounts on another tab or window. Open Source where there are two notable aspects: We first change chromosome names from 21. snapshot. These can be added as a new INFO field to the VCF or in a custom text format. The primary user-visible changes in this release are updates to the annot-tsv tool and some speed improvements. g. Also you need a glibc based system like Ubuntu, Fedora or Centos (Alpine Linux does not work natively). More information about BioConda can be found here. Configure it: Add channels: conda config --add channels defaults; conda config --add channels While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix. About Anaconda Help Download Anaconda. Apr 15, 2022 · The correct ad hoc installation command for Bioconda packages is: conda install -c conda-forge -c bioconda -c defaults bcftools However, if you have an Anaconda base (as opposed to Miniforge), it is usually not a good idea to prioritize the conda-forge channel when installing in base (can lead to lots of channel switching and long solves Good direction to find an installer package for Samtools. Use --noswap to disable swapping REF and ALT. 7 in the channel, so everytime I try and install bcftools, even if I have gsl=2. knowledgebase. To install the sra-tools along with some associated tools for searching genome databases (called entrez-tools), simply run the following command with conda. 5. Please raise conda specific issues in the various conda githubs (likely bioconda here), or on general sites like biostars. If you want to convert ClinVar or COSMIC, --noswap option is recommended. . Entrez-direct. Type make prefix=/path/to/dir install to install everything under your choice of installation directory. 9 安装成功啦! (bcftools_software) $ bcftools Program: bcftools (Tools for variant calling and manipulating VCFs and BCFs) Version: 1. htslib. 2. 18 htslib=1. Step 1: Install Mamba. We will show all commands using mamba below, but the arguments are the same for the two others. 5 already installed, conda wants to upgrade the gsl version which then results in an unusable bcftools Widespread adoption has seen HTSlib downloaded \\&gt;1 million times from GitHub and conda. Nov 7, 2023 · conda uninstall bcftools conda create -n bcftools_software conda activate bcftools_software conda install -c bioconda bcftools=1. 21 While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). Given that you already have a conda environment in which you want to have this package, install with: Nov 28, 2023 · 文章浏览阅读4. # add the bioconda channel # conda config --add channels bioconda # install mosdepth with the conda package manager # conda install mosdepth bam-readcount bam-readcount is a program for determing read support for individual variants (SNVs and Indels only). cloud . 22 to chr21, chr22. The most up to date (development) version of BCFtools can be obtained from github as described here. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. 2 bcftools-1. SNPs and indels), before finally visualizing and annotating the obtained variants. Java tools for working with NGS data in the BAM format. conda install To conda install gregvonkuster::bcftools-gtc2vcf-plugin. 04 ADD COMMENT • link 2. Nov 25, 2024 · 文章浏览阅读147次。安装bcftools，这是一个用于处理基因组变异数据的工具包，通常适用于基于BAM或VCF文件的操作。以下是通过常见Linux发行版（如Ubuntu或CentOS）以及Conda（科学计算环境）安装bcftools的一般步骤： recipe bcftools. Emboss You signed in with another tab or window. 04 in a Windows WSL2 VM tried the conda install -c bioconda "samtools>=1. Given that you already have a conda environment in which you want to have this package, install with: Download Miniconda. 6. This can happen when you load a python module or activate your own conda installation before the desktop session starts. ANACONDA. tag2tag. Download Source code releases can be downloaded from GitHub or Sourceforge : Once the python 3 environment has been created, conda can be used to install the required dependencies. be/D3S6bIjWbDgInstall bcftools using anaconda:https://youtu. 1-Ubuntu SMP ~ conda config --show channels channels: - conda-forge - bioconda - defaults If using conda 23. Jan 17, 2025 · 在基因组学研究中，bcftools是一套强大的工具集，用于处理和分析了下一代测序数据。它支持多种格式转换、排序、查询、统计、变异调用以及效应分析等功能。作为开源项目，bcftools以其高效的性能和灵活性，成为了科研工作者的首选工具之一。本文将详细介绍bcftools的安装和使用教程，帮助用户更 bcftools¶ BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. ) New plugin bcftools +variant-distance to annotate records with distance to the nearest variant conda install bcftools. conda install -c bioconda treemix conda install vcftools conda install bcftools conda install plink Or While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). Linux只是爱好，生信才是生活。得安装一些常用的软件了。 1samtools安装. 2k次。博主在没有root权限的情况下遇到了使用conda安装的bcftools运行时提示缺少libcrypto. 2. 04 LTS # needed for bwa & samtools: sudo apt-get install build-essential make libz-dev -y # needed for samtools: sudo apt-get install cwltool libc-ares2 libhttp-parser2. Open Source To install this package run one of the following: conda install bioconda::snpeff Download Anaconda. Given that you already have a conda environment in which you want to have this package, install with: Jun 1, 2020 · 文章浏览阅读5. It might be run well. This command fetches FastQC from the bioconda channel and installs it in your active Conda environment. exe) if using Miniconda or Anaconda Distribution, and the Miniforge Command Prompt if using Miniforge. Powershell prompts are also available. conda install -c bioconda entrez-direct. But when I call samtools --- Command 'samtools' not found, but can be installed with: About Anaconda Help Download Anaconda. conda install To install this package run one of the following: conda install bioconda::trimmomatic Nov 16, 2021 · 测试结果长成这个丫子，就说明你的plink也安装成功啦！ About Anaconda Help Download Anaconda. Jul 31, 2023 · 001、使用conda安装bcftools， 调用报错如下： [root@PC1 ~]# conda install bcftools -c bioconda ## conda安装 [root@PC1 ~]# bcftools ## 调用测试 002、解决方法1 [root@PC1 ~]# cond vcf2gwas is a Python-built API for GEMMA, PLINK and bcftools performing GWAS directly from a VCF file as well as multiple post-analysis operations. The bcftools liftover plugin generates a . conda install To install this package run one of the following: conda install bioconda::fastqc 📘. 1; osx-arm64 v2. linux-64 v2. 1 libjs-bootstrap nodejs nodejs-doc python python-asn1crypto python-avro python-cachecontrol python-certifi python-cffi-backend python-chardet python-cryptography python-enum34 python-html5lib bcftools view; 用于查看VCF文件的内容，包括样本信息、位点信息、注释信息等. 15 あけましておめでとうございます。今年もよろしくお願い致します。 samtoolsがどんどんアップデートしているので、久しぶりに更新します #BioinformaticsHow to setup Linux in windows: https://youtu. 3. trio HTSlib also provides the bgzip, htsfile, and tabix utilities, so you may also want to build and install HTSlib to get these utilities, or see the additional instructions in INSTALL to install them from a samtools or bcftools source package. 10 ucsc-liftover==377 Download VEP's offline cache for GRCh38, and the reference FASTA: To install this package run one of the following: conda install bioconda::snpeff Download Anaconda. 5 years ago by GenoMax 151k 0 About Anaconda Help Download Anaconda. 16. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming conda install To install this package run one of the following: conda Download Anaconda. be/D3S6bIjWbDgHow to We now want to add bcftools to our environment. 0 htslib==1. ORG. This step-by-step tutorial will walk you through variant calling and variant annotation. Oct 12, 2023 · Example: prioritize conda-forge in one environment. Mamba is a faster alternative to Conda. bcftools进行SNP calling。在最新版的bcftools 中，只需要使用bcftools这一个工具就可以实现SNP calling， 用法如下bcftools mpileup mpileup. Bioconda provides bioinformatics tools. 3k次，点赞19次，收藏17次。BCFtools 项目安装与使用教程 bcftools This is the official development repository for BCFtools. Jan 17, 2024 · 现在，你可以尝试再次安装bcftools。如果你是通过conda进行安装的，运行以下命令： conda install bcftools; 这将重新安装bcftools，并尝试解决依赖问题。如果一切顺利，你应该能够成功安装bcftools并正常使用它。 Jun 14, 2015 · HTSlib also provides the bgzip, htsfile, and tabix utilities, so you may also want to build and install HTSlib to get these utilities, or see the additional instructions in INSTALL to install them from a samtools or bcftools source package. 7 years ago by MSRS &utrif; 590 0 While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). Use the conda install command to install packages into an environment. Given that you already have a conda environment in which you want to have this package, install with: Download the source code here: bcftools-1. The C library has been used directly by an estimated 900 GitHub projects and has been incorporated into Perl, Python, Rust, and R, significantly expanding the number of uses via other languages. 1 Oct 7, 2021 · 文章浏览阅读2. Aug 15, 2020 · In Ubuntu 20. 2 bcftools==1. ref. gz | grep -v "^#" | wc -l 281346 # total number of unique positions, indicating that several sites have two or more alternate alleles bcftools view -v snps NA12878. sorted. We need curl and tar with support for bzip2. See also Download the source code here: bcftools-1. This package depends on 'r-base' because Picard requires R to run some of its metrics commands. tar. bioconda / packages / bcftools. 0. Anaconda. pl is part of bcftools http://www. 7 Apr 4, 2024 · 001、使用conda安装bcftools， 调用报错如下： [root@PC1 ~]# conda install bcftools -c bioconda ## conda安装 [root@PC1 ~]# bcftools ## 调用测试 002、解决方法1 [root@PC1 ~]# cond bcftools安装的坑 - jcfaieng - 博客园 Seconded. bam --fasta-ref mpileup. 11追記2021 2/17 新しい論文を引用、ツイート追加 2021 dockerについて追記 2022/05/12 追記 v1. 13, released last week) with fewer bugs and more features. This command installs BCFtools from the Bioconda channel, ensuring that you have the latest compatible version and all dependencies handled by Conda. Download and compiling. During the install conda downloads packages, create cache, temporary files and log files. BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. Feb 8, 2025 · conda install -qy -c conda-forge -c bioconda -c defaults ensembl-vep==102. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. 1; linux-ppc64le v2. As an FYI based on the original poster, here is the full instructions for Noobs: Note that the installer for Conda is for the Python2. You signed out in another tab or window. To install this package run one of the following: conda install bioconda::gatk Download Anaconda. # Replace <PATH_TO_CONDA> with the path to your conda install source < PATH_TO_CONDA > /bin/activate conda init --all For information on installing in silent mode, see the Quick command line install commands for examples or the Installing in silent mode section of Installing on macOS in the conda project documentation. To install this package run one of the following: conda install bioconda::bcftools-gtc2vcf-plugin conda install bcftools. It works on Linux, OS X and Windows, and was created for Python programs but can package and distribute any software. And i dont think its about being good in Linux — i think im pretty good at it but i still just use conda. Users are now required to choose between the old samtools calling model (-c/--consensus-caller) and the new multiallelic calling model (-m/--multiallelic-caller). While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). 1, TRiCoLOR only requires bedtools in PATH (as this is required by pybedtools). bcftools is: BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. Download current source releases: samtools-1. Use this installer if you want to install most packages yourself. Download Anaconda. Given that you already have a conda environment in which you want to have this package, install with: Apr 3, 2024 · After I run this: $ sudo make prefix=/usr/local/bin install I got result below. From the Packages and Containers tab you can select a conda Good direction to find an installer package for Samtools. Reload to refresh your session. Install specific version. Open Source NumFOCUS Good direction to find an installer package for Samtools. 4k次，点赞4次，收藏9次。本文详细记录了bcftools的下载、安装及编译过程，包括解决liblzma-dev缺失等常见问题，适合生物信息学领域的研究者和学生参考。 To install this package run one of the following: conda install bioconda::bcftools-liftover-plugin. 2 htslib-1. gz SUCCEEDED. conda install conda install johanneskoester::bcftools. Notice: this is the last SAMtools / HTSlib release where CRAM 3. 0 will be the To install this package run one of the following: conda install bioconda::primer3 Download Anaconda. tinybio. 1; win-64 v2. 21 Jan 2, 2020 · Then I tried conda install bwa conda install bcftools conda install plink2 Th Skip to main content. trio-dnm2. Converts between similar tags, such as GL,PL,GP or QR,QA,QS or localized alleles, eg LPL,LAD. Description. 0; conda install To install this package run one of the following: conda install biobuilds::bcftools Type make install to install the bcftools executable and associated scripts and a manual page to /usr/local. 10. It’s recommended for maintaining a clean and manageable working environment. COMMUNITY. Full details of other changes and bugs fixed are below. 22. bcf file which is used to contrast with the provided example; since the two files all have the same coordinates we don't see any output. #, Be able to describe what influences the calling of variants. cloud/chat to chat with a life sciences focused ChatGPT. 7. Open Aug 19, 2021 · conda create --name myenv conda activate myenv conda install -c bioconda bcftools ADD REPLY • link 3. Feb 9, 2024 · conda install -c bioconda bcftools. See bcftools call for variant calling from the output of the samtools mpileup command. Given that you already have a conda environment in which you want to have this package, install with: Description. You'll learn how to fetch whole-genome sequencing data, perform quality control and read mapping, and call small variants (i. We recommend to clean your conda installation each time you create a new environment or add packages to the existing environment. BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. There are three methods to install bcftools on Ubuntu 20. Open Source About Anaconda Help Download Anaconda. Configure it: Add channels: conda config --add channels defaults; conda config --add channels Clean your install. Given that you already have a conda environment in which you want to have this package, install with: Jun 21, 2022 · bcftools 是C语言开发的，所以处理速度非常快，可以看做是VCFtools 的升级版本。 bcftools 在处理文件时，还可以识别bgzip压缩之后的VCF文件。在后续文章中，会对bcftools的用法进行详细介绍。 扫描关注微信号，更多精彩内容等着你！ If the simple copy and paste approach above did not work, see DETAILED INSTRUCTIONS. 1; linux-aarch64 v2. 9 (using htslib 1. 0; linux-ppc64le v1. ) linux-aarch64 v2. bcftools query; 用于提取VCF文件中的信息，可以根据需要选择提取特定的字段或样本信息. Apr 8, 2022 · This is still a conda issue, and will forever remain a conda issue. screen variants for possible de-novo mutations in trios. vcf. 7, 64-bit version. 0; osx-64 v1. By data scientists, for data scientists. The solution is to remove any unnecessary initialization from your . Jun 2, 2019 · conda install sra-tools conda install samtools conda install bcftools conda install vep conda install snpEFF conda install multiqc conda install qualimap 可以一次性安装 代码语言： javascript Download and unzip the executable (from the official conda-forge package): Ensure that basic utilities are installed. 0; osx-arm64 v2. bxvfhq idql vyewv irmn rqnwtgy quiiil ifhgjuf ioknchg pxlmd epxajp